抗结核活性化合物HY-152E的作用靶点分析
收稿日期: 2017-10-24
网络出版日期: 2018-02-25
基金资助
国家自然基金(81673482),上海市科学技术委员会科研计划项目(15431900200)
Identification of protein targets of compound HY-152E with anti-tuberculosis activity using drug affinity responsive target stability
Received date: 2017-10-24
Online published: 2018-02-25
抗结核活性化合物HY-152E是本实验室前期获得的具有良好抗结核活性并拥有授权专利(ZL201210088290.0)的小分子化合物(最低抑菌浓度≤0.09 μg/mL)。为深入探索HY-152E的抗结核机制,本研究利用药物亲和反应靶标稳定性(drug affinity responsive target stability,DARTS)技术并结合蛋白质谱技术,分析可能与HY-152E相互作用的结核分枝杆菌潜在靶标蛋白。将结核分枝杆菌H37Ra的菌体蛋白裂解液与HY-152E共同孵育互作,用不同浓度的链霉菌蛋白酶消化30、45、60 min后,十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(sodium dodecyl sulfate-polyacrylamide gel electrophoresis,SDS-PAGE)分离并比较与HY-152E互作前后菌体蛋白耐受蛋白酶消化的差异条带,分别在相对分子质量70 000和45 000~55 000处观察到差异蛋白条带。利用蛋白质谱技术分析差异条带的蛋白信息,共获得86个蛋白信息。结合结核分枝杆菌数据库及蛋白功能信息,最终筛选到9个蛋白可能是HY-152E的抗结核作用潜在靶标。这些潜在靶点的确定,为后续研究HY-152E的抗结核分子机制奠定了基础。
关键词: 药物亲和反应靶点稳定性; 抗结核化合物; 质谱分析; 靶蛋白
陈瑞祥 , 葛文雪 , 秦云贺 , 王洪海 , 张雪莲 . 抗结核活性化合物HY-152E的作用靶点分析[J]. 微生物与感染, 2018 , 13(1) : 21 -26 . DOI: 10.3969/j.issn.1673-6184.2018.01.005
The compound HY-152E with anti-tuberculosis activity is a small molecule with good anti-tuberculosis activity (MIC≤0.09 μg/mL) in our previously observations (Patent No. ZL201210088290.0). In order to identify the anti-tuberculosis action model of compound HY-152E, the potential direct-binding target of Mycobacterium tuberculosis, which may interact with the compound HY-152E, is analyzed by drug affinity responsive target stability (DARTS) technique and mass spectrometry. DARTS is a general methodology for identifying and studying protein-ligand interactions. The technique is based on the principle that when a small molecule compound binds to a protein, the interaction stabilizes the target protein’s structure such that it becomes protease resistant. Compound HY-152E was added into protein lysates of Mycobacterium tuberculosis H37Ra, and then the samples with or without compound HY-152E were digested using streptomycin protease with different concentrations for 30, 40 or 60 min. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) results showed that there were two differential bands at 70 000 and 45 000-55 000, respectively in different proteolysis samples. The protein information of the two different bands was analyzed using mass spectrometry, and 86 proteins were identified. Nine potential protein targets of compound HY-152E against tuberculosis were screened out after information searching and functional analysis with tuberculosis database. The determination of these potential targets lays the foundation for the further research of anti-tuberculosis molecular mechanism of compound HY-152E.
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